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Public health officials say babies who may have consumed the formula should be monitored for symptoms.
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Maine CDC director Dr. Puthiery Va says decades of evidence shows that the current strategy of giving the vaccine to newborns is safe and effective.
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EEE can cause flu-like symptoms and also lead to brain swelling and meningitis.
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Former CDC Director Susan Monarez was fired in August after than a month on the job. A White House spokesperson said Monarez wasn't "aligned" with President Donald Trump's agenda.
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The new advisories apply to game fish caught in Lovejoy Pond in Albion, the Sebasticook River in Burnham and Benton, Collyer Brook in Gray, and Androscoggin Lake in Leeds and Wayne.
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Nirav Shah says he's stepping down from the US Centers for Disease Control and Prevention at the end of the month.
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Researchers say they hope the findings can help cattle and dairy farmers reduce the risk of contamination.
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More than 95% of school-age children have received all required vaccines. According to the Maine CDC, this is the first year that the state has exceeded what's known as the "herd immunity" threshold since reporting began in 2011.
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The individual worked at Legends Rest Taproom and Paper City BBQ between mid-January and early February.
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The Maine CDC has identified a case of Hepatitis A in a food service worker at the Dockside Grill in Falmouth.